Summary
Overview
Work History
Education
Skills
AWARDS AND FELLOWSHIPS
PUBLICATIONS
Websites
SELECTED ACTIVITIES COACHING AND TEACHING
CONFERENCE ORGANIZED
References
Timeline
Generic

Thimmalapura Marulappa Vishwanatha

Olomouc

Summary

Dynamic professional with extensive hands-on experience in simple and multistep organic synthesis and peptide chemistry, adept at navigating complex challenges. Strong problem-solving abilities combined with a proactive approach ensure effective solutions are consistently delivered. Recognized for adaptability, creativity, and a results-oriented mindset that drives success across various projects. Committed to making meaningful contributions that align with and advance organizational goals.

Overview

18
18
years of professional experience

Work History

Senior Postdoctoral

Palacký University Olomouc
01.2024 - Current

Mentor: Prof. Dr. Alexander Dömling

Theme: Miniaturized chemical synthesis for Direct to Biology

  • Library synthesis of peptide macrocycles (P53-MDM2 & LAG3)
  • Multistep organic synthesis related to PROTACs and glues
  • Total synthesis of tubulysins and linkers


Postdoctoral (EUBOPEN)

LUMC
09.2020 - 08.2023

Mentor: Prof. Huib Ovaa lab (Monique Mulder)

Theme: Organic synthesis and chemical biology

  • High throughput synthesis of covalent inhibitors targeting selective deubiquitinating enzymes
  • Multistep organic synthesis (unnatural amino acids)
  • Design and synthesis of Ubiquitin peptide probes

Postdoctoral & Marie-Curie Fellow

CNRS
04.2017 - 03.2020

Mentor: Dr. Vincent AUCAGNE

Theme: Peptide chemistry

  • Solid-phase peptide chemistry
  • Macrocyclic peptide library generation (GPCR target)
  • Design and synthesis of peptide drug conjugates

Postdoctoral

The University of Groningen
03.2014 - 02.2017

Mentors: Prof. Dr. Alexander Dömling & Prof. Dr. P.H. (Philip) Elsinga

Theme: Organic Synthesis & radiochemistry

  • Total synthesis of Tubulysins and conjugates
  • Multistep organic synthesis
  • Radiochemical synthesis of tubulysin conjugates

Research Associate

Bangalore University
09.2007 - 03.2009

Mentor: Prof. Vommima V. Sureshbabu

Theme: Solution phase peptide chemistry

  • Studies on novel amide bond-forming reaction

Education

Ph.D. - Peptides and peptidomimetic chemistry

Bangalore University
05.2014

M.Sc. - Organic chemistry

Central College, Bangalore University
03.2007

B.Sc. - Chemistry, Physics, Mathematics

Bangalore University
05.2005

Skills

Proficient in bioorganic chemistry

  • Complex organic synthesis
  • Peptide synthesis expertise (solid and solution phase)
  • Miniaturized chemical synthesis (synthesis on well plates)
  • Analytical chemistry

Soft Skills

  • Adaptability
  • Team player
  • Well-organized
  • Problem-solving

AWARDS AND FELLOWSHIPS

  • Best Prize for developing site-selective ligation reaction, Thematic school on Chemical protein synthesis and Bioconjugations. PEPPER School, May 2018, Carry-Le-Route, France.
  • Travel grant 26th American Peptide Symposium, June 22nd – 27th 2019, Monterey, California, USA.
  • LE STUDIUM/Marie Sklodowska-Curie Research Fellowship (February 2019 – April 2020), CNRS, CBM, Orléans, France.
  • Travel grant An international symposium in Chemical biology, January 10th – 12th, 2018, Geneva Switzerland.
  • Senior Research Fellowship (April 2012 – February 2014), Bangalore University, India.

PUBLICATIONS

Articles Published – 36

Patents – 03 (1 is under filing process)

First Author – 13

Second Author – 11

Others – 14

Submitted – 02 (As a first author)

In preparation – 01 (As a first author)

Google Scholar – https://scholar.google.com/citations?hl=en&user=JipfwGoAAAAJ

  • Vishwanatha, T. M.; Imma, C. Dömling, A. Direct biology approach towards the Y220C mutant PROTACs library and studies on their cell degradation studies. Submitted (J. Am. Chem. Soc.)
  • Vishwanatha, T. M.; van Doodeweerd, B. R.; Pol, V.; van der Heden van Noort, G. J.; Mulder, M. P. C.; Geurink, P. P. Automated combinatorial synthesis of an oxadiazole library using a multi-component reaction to target deubiquitinating proteases. under major revision (Angew. Chem. Int. Edn.)
  • Vishwanatha, T. M.; Vincent, R.; Didier, L.; Vincent, A.; Massimiliano, B. Diversity-oriented macrocyclic peptide library generation on solid support: a rapid approach for identifying potent and selective peptide in GPCR targets and their invivo studies. Under revision (Chem. Sci.)
  • David, A. P.; Vishwanatha, T. M.; Horn-Ghetko, D.; Botsch, J. J.; Hehl, L. A.; Kostrohn, S.; Misra, M.; Đikić, I.; Geurink, P. P.; van Dam, H.; Schulman, B. A.; Mulder, M. P. C. et al. A pro-fluorogenic Ubiquitin-based probe to monitor cysteine-based catalytic E3 Ligase activity. Angew Chem. Int. Edn., 2023.
  • Vishwanatha, T. M.; Giepmanis, B.; Goda, S. K. Dömling, A. Tubulysin Synthesis Featuring Stereoselective Catalysis and Highly Convergent Multicomponent Assembly. Org. Lett. 2020, 22, 5396 – 5400.
  • Montoir, D.; Amoura, M. ; Abasa, Z. E. A. ; Vishwanatha. T. M. ; Yen-Pon, E. ; Robert, V. ; Beltramo, M. ; Piller. V. ; Alami, Y. ; Aucagne, V. ; Messaoudi, S. Synthesis of aryl-thioglycopeptides through chemoselective Pd-mediated conjugation. Chem. Sci. 2018, 9, 8753 – 8759.
  • Vishwanatha, T. M.; Bergamaschi, E.; Dömling, A. Sulfur-Switch Ugi-Reaction For Macrocyclic Disulfide-Bridged Peptidomimetic Synthesis. Org. Lett. 2017, 19, 3195 – 3198. (DOI: https://doi.org/10.1021/acs.orglett.7b01324)
  • Vishwanatha, T. M.; Kurpiewska, K.; Kalinowska-TlusciK, J.; Dömling, A. Cysteine isocyanide: Concise multicomponent synthesis of peptidomimetic 1,3-azoles. J. Org. Chem. 2017, 82, 9585 – 9594. (DOI: https://doi.org/10.1021/acs.joc.7b01615)
  • Vishwanatha, T. M.; Narendra, N.; Basab Chattopadhyay, Monika Mukherjee, Sureshbabu, V. V. Synthesis of selenoxo peptides and oligoselenoxo peptides employing LiAlHSeH. J. Org. Chem. 2012, 77, 2689 – 2702. (DOI: https://doi.org/10.1021/jo2024703)

SELECTED ACTIVITIES COACHING AND TEACHING

  • Thesis management and co-supervision of master and bachelor students
  • 01 Imma Capriello, Ph.D., Co-supervision, at Palacky University, 02/2024 – on going Olomouc, Czech Republic
  • 02 Mayur Mukim, Ph.D., Co-supervision, at Palacky University, 05/2024 – on going Olomouc, Czech Republic
  • 03 Mike, Master’s project, LUMC, The Netherlands 03/2021 – 02/2022
  • 04 Renan Vinicius de Araújo, Bachelor’s project, University of Groningen, The Netherlands. 03/2016 – 12/2016
  • 05 Kees Wildeveld, Master’s project, University of Groningen, The Netherlands. 03/2016 – 02/2017
  • 06 Enrico Bergamaschi, Bachelor’s project, University of Groningen, The Netherlands. 01/2016 – 06/2016
  • 07 Pallavi T. R. Master’s project at Bangalore University, India 02/2011 – 06/2011

CONFERENCE ORGANIZED

  • Challenges and prospects in chemoselective ligations: from protein synthesis to site-specific conjugation” LE STUDIUM International Conference, January 27th – 29th, 2020, Orléans, France.
  • 1st Innovative conference chemistry and chemical biology, 1st and 2nd October, 2025, Olomouc, Czech Republic.

References

  • Prof. dr. Alexander, Dömling, Palacky University, Olomouc, Czech Republic. Email: alexander.domling@upol.cz,
  • Dr. Monique, Mulder, Leiden University Medical Center, Leiden, The Netherlands. Email: m.p.c.mulder@lumc.nl,
  • Dr. Vincent, Aucagne, CNRS Centre de Biophysique Moléculaire, Orléans, France, UPR 4301. Email: aucagne@cnrs-orleans.fr,

Timeline

Senior Postdoctoral

Palacký University Olomouc
01.2024 - Current

Postdoctoral (EUBOPEN)

LUMC
09.2020 - 08.2023

Postdoctoral & Marie-Curie Fellow

CNRS
04.2017 - 03.2020

Postdoctoral

The University of Groningen
03.2014 - 02.2017

Research Associate

Bangalore University
09.2007 - 03.2009

M.Sc. - Organic chemistry

Central College, Bangalore University

B.Sc. - Chemistry, Physics, Mathematics

Bangalore University

Ph.D. - Peptides and peptidomimetic chemistry

Bangalore University
Thimmalapura Marulappa Vishwanatha